Detailed information of SNP:
|
SNP ID:
sf0235285041(Gbrowse)
Chromosome: chr02 Position: 35285041 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 96.69% | 3.31% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 469 | 90.19% | 9.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 79 | 55.70% | 44.30% |
| Japonica Intermediate | 60 | 85.00% | 15.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235285041 | G->T | INTERGENIC | None |