Detailed information of SNP:
|
SNP ID:
sf0235312779(Gbrowse)
Chromosome: chr02 Position: 35312779 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 67.77% | 32.23% |
| All Indica | 798 | 66.67% | 33.33% |
| All Japonica | 496 | 75.60% | 24.40% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 37.97% | 62.03% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 93 | 34.41% | 65.59% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235312779 | T->C | INTERGENIC | None |