Detailed information of SNP:
|
SNP ID:
sf0235317720(Gbrowse)
Chromosome: chr02 Position: 35317720 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 91.08% | 8.92% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 492 | 75.61% | 24.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 89 | 31.46% | 68.54% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235317720 | G->A | INTERGENIC | None |