Detailed information of SNP:
|
SNP ID:
sf0235319531(Gbrowse)
Chromosome: chr02 Position: 35319531 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 70.41% | 29.59% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 495 | 19.39% | 80.61% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 10.78% | 89.22% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235319531 | T->G | INTERGENIC | None |