Detailed information of SNP:
|
SNP ID:
sf0235331267(Gbrowse)
Chromosome: chr02 Position: 35331267 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1303 | 97.54% | 2.46% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 390 | 95.64% | 4.36% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 247 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 81.18% | 18.82% |
| Japonica Intermediate | 58 | 98.28% | 1.72% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235331267 | T->C | LOC_Os02g57700(LOC_Os02g57700.1) | INTRON |