Detailed information of SNP:
|
SNP ID:
sf0235370059(Gbrowse)
Chromosome: chr02 Position: 35370059 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 96.23% | 3.77% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 432 | 88.66% | 11.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 286 | 98.95% | 1.05% |
| Tropical Japonica | 85 | 54.12% | 45.88% |
| Japonica Intermediate | 61 | 88.52% | 11.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235370059 | G->A | INTERGENIC | None |