Detailed information of SNP:
|
SNP ID:
sf0235408675(Gbrowse)
Chromosome: chr02 Position: 35408675 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 95.49% | 4.51% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235408675 | T->G | INTERGENIC | None |