Detailed information of SNP:
|
SNP ID:
sf0235425828(Gbrowse)
Chromosome: chr02 Position: 35425828 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 71.72% | 28.28% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 28.17% | 71.83% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 34.33% | 65.67% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235425828 | A->T | LOC_Os02g57860(LOC_Os02g57860.1) | INTRON |