Detailed information of SNP:
|
SNP ID:
sf0235431418(Gbrowse)
Chromosome: chr02 Position: 35431418 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 96.90% | 3.10% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 471 | 91.51% | 8.49% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 99.37% | 0.63% |
| Tropical Japonica | 88 | 64.77% | 35.23% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235431418 | G->A | INTERGENIC | None |