Detailed information of SNP:
|
SNP ID:
sf0235463914(Gbrowse)
Chromosome: chr02 Position: 35463914 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 58.33% | 41.67% |
| All Indica | 761 | 34.17% | 65.83% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 353 | 36.54% | 63.46% |
| Indica II | 203 | 30.05% | 69.95% |
| Indica Intermediate | 205 | 34.15% | 65.85% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235463914 | A->C | LOC_Os02g57930(LOC_Os02g57930.1) | Non-Synonymous SNP |