Detailed information of SNP:
|
SNP ID:
sf0235468834(Gbrowse)
Chromosome: chr02 Position: 35468834 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 96.05% | 3.95% |
| All Indica | 797 | 95.86% | 4.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235468834 | C->T | INTERGENIC | None |