Detailed information of SNP:
|
SNP ID:
sf0235525527(Gbrowse)
Chromosome: chr02 Position: 35525527 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.48% | 45.52% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235525527 | A->G | LOC_Os02g58030(LOC_Os02g58030.1) | INTRON |