Detailed information of SNP:
|
SNP ID:
sf0235575812(Gbrowse)
Chromosome: chr02 Position: 35575812 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 86.32% | 13.68% |
| All Indica | 798 | 76.69% | 23.31% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 67.65% | 32.35% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235575812 | C->T | LOC_Os02g58160(LOC_Os02g58160.1) | Non-Synonymous SNP |
| sf0235575812 | C->T | LOC_Os02g58160(LOC_Os02g58160.2) | Non-Synonymous SNP |