Detailed information of SNP:
|
SNP ID:
sf0235575928(Gbrowse)
Chromosome: chr02 Position: 35575928 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 86.68% | 13.32% |
| All Indica | 799 | 77.35% | 22.65% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 68.27% | 31.73% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235575928 | G->T | LOC_Os02g58160(LOC_Os02g58160.1) | INTRON |
| sf0235575928 | G->T | LOC_Os02g58160(LOC_Os02g58160.2) | INTRON |