Detailed information of SNP:



SNP ID: sf0235575928(Gbrowse)

Chromosome: chr02

Position: 35575928
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1419 86.68% 13.32%
All Indica799 77.35% 22.65%
All Japonica497 99.60% 0.40%
Aus67 100.00% 0.00%
Indica I375 68.27% 31.73%
Indica II213 95.31% 4.69%
Indica Intermediate211 75.36% 24.64%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0235575928 G->T LOC_Os02g58160(LOC_Os02g58160.1) INTRON
sf0235575928 G->T LOC_Os02g58160(LOC_Os02g58160.2) INTRON