Detailed information of SNP:
|
SNP ID:
sf0235577535(Gbrowse)
Chromosome: chr02 Position: 35577535 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 58.01% | 41.99% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235577535 | G->A | INTERGENIC | None |