Detailed information of SNP:
|
SNP ID:
sf0235584767(Gbrowse)
Chromosome: chr02 Position: 35584767 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.14% | 43.86% |
| All Indica | 796 | 93.09% | 6.91% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 372 | 95.16% | 4.84% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235584767 | G->A | INTERGENIC | None |