Detailed information of SNP:
|
SNP ID:
sf0235587224(Gbrowse)
Chromosome: chr02 Position: 35587224 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.32% | 43.68% |
| All Indica | 797 | 93.35% | 6.65% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235587224 | G->A | INTERGENIC | None |