Detailed information of SNP:
|
SNP ID:
sf0235601156(Gbrowse)
Chromosome: chr02 Position: 35601156 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1176 | 79.93% | 20.07% |
| All Indica | 566 | 61.48% | 38.52% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 319 | 63.01% | 36.99% |
| Indica II | 110 | 60.91% | 39.09% |
| Indica Intermediate | 137 | 58.39% | 41.61% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235601156 | A->G | INTERGENIC | None |