Detailed information of SNP:
|
SNP ID:
sf0235777031(Gbrowse)
Chromosome: chr02 Position: 35777031 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 67.73% | 32.27% |
| All Indica | 794 | 45.72% | 54.28% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 27.61% | 72.39% |
| Indica II | 213 | 59.15% | 40.85% |
| Indica Intermediate | 208 | 64.42% | 35.58% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235777031 | A->G | INTERGENIC | None |