Detailed information of SNP:
|
SNP ID:
sf0235859193(Gbrowse)
Chromosome: chr02 Position: 35859193 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1274 | 93.01% | 6.99% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 368 | 78.80% | 21.20% |
| Aus | 59 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 245 | 71.43% | 28.57% |
| Tropical Japonica | 73 | 95.89% | 4.11% |
| Japonica Intermediate | 50 | 90.00% | 10.00% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235859193 | A->G | LOC_Os02g58700(LOC_Os02g58700.1) | Synonymous |