Detailed information of SNP:
|
SNP ID:
sf0235865319(Gbrowse)
Chromosome: chr02 Position: 35865319 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 58.33% | 41.67% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235865319 | A->G | LOC_Os02g58710(LOC_Os02g58710.1) | Non-Synonymous SNP |