Detailed information of SNP:
|
SNP ID:
sf0235914006(Gbrowse)
Chromosome: chr02 Position: 35914006 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 97.63% | 2.37% |
| All Indica | 774 | 95.87% | 4.13% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 92.22% | 7.78% |
| Indica II | 208 | 99.52% | 0.48% |
| Indica Intermediate | 206 | 98.54% | 1.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235914006 | G->A | LOC_Os02g58780(LOC_Os02g58780.1) | INTRON |