Detailed information of SNP:
|
SNP ID:
sf0235919754(Gbrowse)
Chromosome: chr02 Position: 35919754 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.19% | 42.81% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235919754 | T->C | LOC_Os02g58790(LOC_Os02g58790.4) | INTRON |
| sf0235919754 | T->C | LOC_Os02g58790(LOC_Os02g58790.2) | INTRON |
| sf0235919754 | T->C | LOC_Os02g58790(LOC_Os02g58790.3) | INTRON |
| sf0235919754 | T->C | LOC_Os02g58790(LOC_Os02g58790.5) | INTRON |
| sf0235919754 | T->C | LOC_Os02g58790(LOC_Os02g58790.1) | INTRON |