Detailed information of SNP:
|
SNP ID:
sf0235920713(Gbrowse)
Chromosome: chr02 Position: 35920713 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 96.97% | 3.03% |
| All Indica | 798 | 94.86% | 5.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0235920713 | A->T | LOC_Os02g58790(LOC_Os02g58790.4) | INTRON |
| sf0235920713 | A->T | LOC_Os02g58790(LOC_Os02g58790.2) | INTRON |
| sf0235920713 | A->T | LOC_Os02g58790(LOC_Os02g58790.3) | INTRON |
| sf0235920713 | A->T | LOC_Os02g58790(LOC_Os02g58790.5) | INTRON |
| sf0235920713 | A->T | LOC_Os02g58790(LOC_Os02g58790.1) | INTRON |