Detailed information of SNP:
|
SNP ID:
sf0300174534(Gbrowse)
Chromosome: chr03 Position: 174534 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 92.39% | 7.61% |
| All Indica | 799 | 90.86% | 9.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300174534 | G->T | INTERGENIC | None |