Detailed information of SNP:
|
SNP ID:
sf0300179852(Gbrowse)
Chromosome: chr03 Position: 179852 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1229 | 52.73% | 47.27% |
| All Indica | 736 | 78.67% | 21.33% |
| All Japonica | 383 | 9.40% | 90.60% |
| Aus | 61 | 29.51% | 70.49% |
| Indica I | 358 | 82.12% | 17.88% |
| Indica II | 175 | 72.57% | 27.43% |
| Indica Intermediate | 203 | 77.83% | 22.17% |
| Temperate Japonica | 253 | 7.11% | 92.89% |
| Tropical Japonica | 77 | 16.88% | 83.12% |
| Japonica Intermediate | 53 | 9.43% | 90.57% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 36 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300179852 | C->T | INTERGENIC | None |