Detailed information of SNP:
|
SNP ID:
sf0300229192(Gbrowse)
Chromosome: chr03 Position: 229192 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 67.77% | 32.23% |
| All Indica | 780 | 47.44% | 52.56% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 364 | 31.04% | 68.96% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 204 | 48.53% | 51.47% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300229192 | C->T | INTERGENIC | None |