Detailed information of SNP:
|
SNP ID:
sf0300231324(Gbrowse)
Chromosome: chr03 Position: 231324 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 62.44% | 37.56% |
| All Indica | 794 | 38.79% | 61.21% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 21.39% | 78.61% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 208 | 33.65% | 66.35% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300231324 | C->T | INTERGENIC | None |