Detailed information of SNP:
|
SNP ID:
sf0300232526(Gbrowse)
Chromosome: chr03 Position: 232526 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 62.16% | 37.84% |
| All Indica | 796 | 38.32% | 61.68% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 20.80% | 79.20% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 209 | 33.49% | 66.51% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300232526 | A->G | INTERGENIC | None |