Detailed information of SNP:
|
SNP ID:
sf0300243272(Gbrowse)
Chromosome: chr03 Position: 243272 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 52.23% | 47.77% |
| All Indica | 777 | 19.95% | 80.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 56.92% | 43.08% |
| Indica I | 367 | 6.81% | 93.19% |
| Indica II | 211 | 42.65% | 57.35% |
| Indica Intermediate | 199 | 20.10% | 79.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300243272 | A->G | INTERGENIC | None |