Detailed information of SNP:
|
SNP ID:
sf0300243541(Gbrowse)
Chromosome: chr03 Position: 243541 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 87.75% | 12.25% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 482 | 67.22% | 32.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 325 | 59.69% | 40.31% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 65 | 73.85% | 26.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300243541 | T->C | INTERGENIC | None |