Detailed information of SNP:
|
SNP ID:
sf0300246343(Gbrowse)
Chromosome: chr03 Position: 246343 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.91% | 37.09% |
| All Indica | 798 | 39.60% | 60.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 21.33% | 78.67% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300246343 | C->T | INTERGENIC | None |