Detailed information of SNP:
|
SNP ID:
sf0300251316(Gbrowse)
Chromosome: chr03 Position: 251316 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 57.56% | 42.44% |
| All Indica | 797 | 30.11% | 69.89% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 375 | 22.13% | 77.87% |
| Indica II | 212 | 47.17% | 52.83% |
| Indica Intermediate | 210 | 27.14% | 72.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300251316 | A->G | INTERGENIC | None |