Detailed information of SNP:
|
SNP ID:
sf0300261673(Gbrowse)
Chromosome: chr03 Position: 261673 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.16% | 48.84% |
| All Indica | 799 | 84.36% | 15.64% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 59.15% | 40.85% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300261673 | G->A | INTERGENIC | None |