Detailed information of SNP:
|
SNP ID:
sf0300305964(Gbrowse)
Chromosome: chr03 Position: 305964 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 62.29% | 37.71% |
| All Indica | 796 | 38.19% | 61.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 20.53% | 79.47% |
| Indica II | 211 | 70.62% | 29.38% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300305964 | G->A | LOC_Os03g01442(LOC_Os03g01442.1) | UTR_3_PRIME |