Detailed information of SNP:
|
SNP ID:
sf0300315491(Gbrowse)
Chromosome: chr03 Position: 315491 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 50.32% | 49.68% |
| All Indica | 799 | 83.23% | 16.77% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300315491 | A->G | LOC_Os03g01480(LOC_Os03g01480.1) | INTRON |