Detailed information of SNP:
|
SNP ID:
sf0300315828(Gbrowse)
Chromosome: chr03 Position: 315828 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 59.36% | 40.64% |
| All Indica | 795 | 33.33% | 66.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 28.07% | 71.93% |
| Indica II | 211 | 46.45% | 53.55% |
| Indica Intermediate | 210 | 29.52% | 70.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300315828 | C->T | LOC_Os03g01480(LOC_Os03g01480.1) | INTRON |