Detailed information of SNP:
|
SNP ID:
sf0300329719(Gbrowse)
Chromosome: chr03 Position: 329719 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1309 | 70.21% | 29.79% |
| All Indica | 694 | 45.82% | 54.18% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 347 | 34.01% | 65.99% |
| Indica II | 169 | 72.19% | 27.81% |
| Indica Intermediate | 178 | 43.82% | 56.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300329719 | T->C | INTERGENIC | None |