Detailed information of SNP:
|
SNP ID:
sf0300352674(Gbrowse)
Chromosome: chr03 Position: 352674 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 63.22% | 36.78% |
| All Indica | 795 | 40.00% | 60.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 53.03% | 46.97% |
| Indica I | 372 | 21.51% | 78.49% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300352674 | G->A | INTERGENIC | None |