Detailed information of SNP:
|
SNP ID:
sf0300463164(Gbrowse)
Chromosome: chr03 Position: 463164 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 51.16% | 48.84% |
| All Indica | 798 | 17.92% | 82.08% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 375 | 6.40% | 93.60% |
| Indica II | 212 | 41.51% | 58.49% |
| Indica Intermediate | 211 | 14.69% | 85.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300463164 | C->A | INTERGENIC | None |