Detailed information of SNP:
|
SNP ID:
sf0300482841(Gbrowse)
Chromosome: chr03 Position: 482841 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 87.57% | 12.43% |
| All Indica | 796 | 79.65% | 20.35% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 211 | 66.82% | 33.18% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300482841 | C->T | LOC_Os03g01770(LOC_Os03g01770.1) | INTRON |