Detailed information of SNP:
|
SNP ID:
sf0300483979(Gbrowse)
Chromosome: chr03 Position: 483979 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.44% | 45.56% |
| All Indica | 798 | 23.68% | 76.32% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 17.60% | 82.40% |
| Indica II | 212 | 39.62% | 60.38% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300483979 | A->G | INTERGENIC | None |