Detailed information of SNP:
|
SNP ID:
sf0300502909(Gbrowse)
Chromosome: chr03 Position: 502909 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.27% | 40.73% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300502909 | T->C | INTERGENIC | None |