Detailed information of SNP:
|
SNP ID:
sf0300544000(Gbrowse)
Chromosome: chr03 Position: 544000 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.10% | 46.90% |
| All Indica | 798 | 87.22% | 12.78% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300544000 | A->G | INTERGENIC | None |