Detailed information of SNP:
|
SNP ID:
sf0300545860(Gbrowse)
Chromosome: chr03 Position: 545860 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1332 | 53.15% | 46.85% |
| All Indica | 724 | 90.33% | 9.67% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 61 | 55.74% | 44.26% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 147 | 84.35% | 15.65% |
| Indica Intermediate | 202 | 85.64% | 14.36% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 36 | 41.67% | 58.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300545860 | G->A | INTERGENIC | None |