Detailed information of SNP:
|
SNP ID:
sf0300647818(Gbrowse)
Chromosome: chr03 Position: 647818 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.04% | 44.96% |
| All Indica | 799 | 87.48% | 12.52% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300647818 | G->A | LOC_Os03g02040(LOC_Os03g02040.1) | INTRON |