Detailed information of SNP:
|
SNP ID:
sf0300706948(Gbrowse)
Chromosome: chr03 Position: 706948 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.08% | 10.92% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 71.03% | 28.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 60.00% | 40.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300706948 | A->C | LOC_Os03g02150(LOC_Os03g02150.1) | UTR_3_PRIME |
| sf0300706948 | A->C | LOC_Os03g02150(LOC_Os03g02150.2) | INTRON |