Detailed information of SNP:
|
SNP ID:
sf0300760693(Gbrowse)
Chromosome: chr03 Position: 760693 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 90.89% | 9.11% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 442 | 73.30% | 26.70% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 82.35% | 17.65% |
| Tropical Japonica | 81 | 69.14% | 30.86% |
| Japonica Intermediate | 55 | 29.09% | 70.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300760693 | C->A | INTERGENIC | None |