Detailed information of SNP:
|
SNP ID:
sf0300760825(Gbrowse)
Chromosome: chr03 Position: 760825 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1331 | 75.51% | 24.49% |
| All Indica | 795 | 98.36% | 1.64% |
| All Japonica | 420 | 28.81% | 71.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 283 | 19.79% | 80.21% |
| Tropical Japonica | 81 | 32.10% | 67.90% |
| Japonica Intermediate | 56 | 69.64% | 30.36% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 35 | 88.57% | 11.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300760825 | A->T | INTERGENIC | None |