Detailed information of SNP:
|
SNP ID:
sf0300780582(Gbrowse)
Chromosome: chr03 Position: 780582 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 74.70% | 25.30% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 58.75% | 41.25% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 62.44% | 37.56% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 46.27% | 53.73% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0300780582 | G->A | LOC_Os03g02280(LOC_Os03g02280.1) | Non-Synonymous SNP |